This is still not certain, two different committees will propose Jomon and Amami Islands to the government final decision. This is the result of new policy of WHC that only 1 site per country.

Typhoon damaged WHSs in Kyoto and Nara

Initial report : some damages at Nara's Kasuga Taisha Shrine, Kyoto's Shimogama Shrine, Nijo Castle, Ninnaji Temple.

http://www.asahi.com/sp/ajw/articles/AJ201809050023.html

More damages report from WHSs of Nijo Castle, To-ji and Nishi Honganji Temple

https://www.asahi.com/sp/articles/ASL9556XQL95PLZB01N.html

400 years old "mother tree" of WHS of Shirakami Sanchi also broken down by the strong wind.

https://www.nikkansports.com/m/general/news/201809070000764_m.html?mode=all

Minor damage at Horyu-ji Temple

https://www.jiji.com/sp/article?k=2018090500904&g=oeq

Roof damage at Kimpusan-ji Temple (part of WHS Kii Mountain)

https://www.sankei.com/smp/west/news/180906/wst1809060040-s1.html

WHS Nara's Kofukuji rebuilt hall which burned down in 1717!

http://www.asahi.com/ajw/articles/AJ201810190003.html

in 2017 another Nara WHS's Yakushiji rebuilt Jikido Hall which burned down around 1700!

https://mainichi.jp/english/articles/20170510/p2a/00m/0na/004000c